Function introduction Uses can submit a probe, gene, or genomic list and select a cancer type and a tissue type to analyze probe-gene pairs in selected cancer type with 3D chromatin interaction data of selected tissue. For a probe-gene pair, if its ±1kb of probe or promoter of gene overlap with 3D chromatin interaction anchors, it would be displayed in the result in detail. 1) Cancer type: Select one cancer type to analyze probe-gene pairs. 2) Input: input a probe, gene, or genomic list to get probe-gene pairs in the background. 3) Cut off of target gene predict methods: Select cut off for probe-gene pairs. 4) Definition of Promoter: Select a defined or define a promoter for the gene in the pairs to do bedtools with 3D chromatin interaction anchors. 5) Tissue type of the 3D samples: Select a tissue type for 3D chromatin interaction data.
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