logo CATA Data BaseV1.01

Cancer Type



Parameter explanation:

Cancer type: include 24 cancer types. (ACC, BLCA, BRCA, CESC, CHOL, COAD, ESCA, GBM, HNSC, KIRC, KIRP, LGG, LIHC, LUAD, LUSC, MESO, PCPG, PRAD, SKCM, STAD, TGCT, THCA, UCEC, PAN)

Gene Symbol


Cancer Type


Strategies/Algorithm


Parameter explanation:

1) Strategies/Algorithm: The closest active, ROSE overlap, ROSE proximal, ROSE closest.

2) Gene symbol: Only gene symbol can be supported.

Motif


Cancer Type


Parameter explanation:

1) Motif name: only supported gene symbol.

2) Cancer type: include 24 cancer type.

Cancer Type


Chromosame


Start Position


End Position


Cancer type include 24 cancer type:

1) Chromosome: Chromosome.

2) Start position: The accessible genome is at the start of the chromosome.

3) End position: The accessible genome is at the end of the chromosome.

4) Only supported hg38 reference genome.